00001 #define UINT32 unsigned int 00002 #define UINT16 unsigned short 00003 #define INT32 signed int 00004 #define INT16 signed short 00005 00006 #define MAXIMAGES 9 00007 00008 typedef struct { 00009 /* File/header format parameters (256 bytes) */ 00010 UINT32 header_type; /* flag for header type (can be used as magic number) */ 00011 char header_name[16]; /* header name (MMX) */ 00012 UINT32 header_major_version; /* header_major_version (n.) */ 00013 UINT32 header_minor_version; /* header_minor_version (.n) */ 00014 UINT32 header_byte_order;/* BIG_ENDIAN (Motorola,MIPS); LITTLE_ENDIAN (DEC, Intel) */ 00015 UINT32 data_byte_order; /* BIG_ENDIAN (Motorola,MIPS); LITTLE_ENDIAN (DEC, Intel) */ 00016 UINT32 header_size; /* in bytes */ 00017 UINT32 frame_type; /* flag for frame type */ 00018 UINT32 magic_number; /* to be used as a flag - usually to indicate new file */ 00019 UINT32 compression_type; /* type of image compression */ 00020 UINT32 compression1; /* compression parameter 1 */ 00021 UINT32 compression2; /* compression parameter 2 */ 00022 UINT32 compression3; /* compression parameter 3 */ 00023 UINT32 compression4; /* compression parameter 4 */ 00024 UINT32 compression5; /* compression parameter 4 */ 00025 UINT32 compression6; /* compression parameter 4 */ 00026 UINT32 nheaders; /* total number of headers */ 00027 UINT32 nfast; /* number of pixels in one line */ 00028 UINT32 nslow; /* number of lines in image */ 00029 UINT32 depth; /* number of bytes per pixel */ 00030 UINT32 record_length; /* number of pixels between succesive rows */ 00031 UINT32 signif_bits; /* true depth of data, in bits */ 00032 UINT32 data_type; /* (signed,unsigned,float...) */ 00033 UINT32 saturated_value; /* value marks pixel as saturated */ 00034 UINT32 sequence; /* TRUE or FALSE */ 00035 UINT32 nimages; /* total number of images - size of each is nfast*(nslow/nimages) */ 00036 UINT32 origin; /* corner of origin */ 00037 UINT32 orientation; /* direction of fast axis */ 00038 UINT32 view_direction; /* direction to view frame */ 00039 UINT32 overflow_location;/* FOLLOWING_HEADER, FOLLOWING_DATA */ 00040 UINT32 over_8_bits; /* # of pixels with counts > 255 */ 00041 UINT32 over_16_bits; /* # of pixels with count > 65535 */ 00042 UINT32 multiplexed; /* multiplex flag */ 00043 UINT32 nfastimages; /* # of images in fast direction */ 00044 UINT32 nslowimages; /* # of images in slow direction */ 00045 UINT32 background_applied; /* flags correction has been applied - hold magic number ? */ 00046 UINT32 bias_applied; /* flags correction has been applied - hold magic number ? */ 00047 UINT32 flatfield_applied; /* flags correction has been applied - hold magic number ? */ 00048 UINT32 distortion_applied; /* flags correction has been applied - hold magic number ? */ 00049 UINT32 original_header_type; /* Header/frame type from file that frame is read from */ 00050 00051 00052 char reserve1[(64-39)*sizeof(INT32)-16]; 00053 00054 /* Data statistics (128) */ 00055 UINT32 total_counts[2]; /* 64 bit integer range = 1.85E19*/ 00056 UINT32 special_counts1[2]; 00057 UINT32 special_counts2[2]; 00058 UINT32 min; 00059 UINT32 max; 00060 UINT32 mean; 00061 UINT32 rms; 00062 UINT32 p10; 00063 UINT32 p90; 00064 UINT32 stats_uptodate; 00065 UINT32 pixel_noise[MAXIMAGES]; /* 1000*base noise value (ADUs) */ 00066 char reserve2[(32-13-MAXIMAGES)*sizeof(INT32)]; 00067 00068 /* More statistics (256) */ 00069 UINT16 percentile[128]; 00070 00071 00072 /* Goniostat parameters (128 bytes) */ 00073 INT32 xtal_to_detector; /* 1000*distance in millimeters */ 00074 INT32 beam_x; /* 1000*x beam position (pixels) */ 00075 INT32 beam_y; /* 1000*y beam position (pixels) */ 00076 INT32 integration_time; /* integration time in milliseconds */ 00077 INT32 exposure_time; /* exposure time in milliseconds */ 00078 INT32 readout_time; /* readout time in milliseconds */ 00079 INT32 nreads; /* number of readouts to get this image */ 00080 INT32 start_twotheta; /* 1000*two_theta angle */ 00081 INT32 start_omega; /* 1000*omega angle */ 00082 INT32 start_chi; /* 1000*chi angle */ 00083 INT32 start_kappa; /* 1000*kappa angle */ 00084 INT32 start_phi; /* 1000*phi angle */ 00085 INT32 start_delta; /* 1000*delta angle */ 00086 INT32 start_gamma; /* 1000*gamma angle */ 00087 INT32 start_xtal_to_detector; /* 1000*distance in mm (dist in um)*/ 00088 INT32 end_twotheta; /* 1000*two_theta angle */ 00089 INT32 end_omega; /* 1000*omega angle */ 00090 INT32 end_chi; /* 1000*chi angle */ 00091 INT32 end_kappa; /* 1000*kappa angle */ 00092 INT32 end_phi; /* 1000*phi angle */ 00093 INT32 end_delta; /* 1000*delta angle */ 00094 INT32 end_gamma; /* 1000*gamma angle */ 00095 INT32 end_xtal_to_detector; /* 1000*distance in mm (dist in um)*/ 00096 INT32 rotation_axis; /* active rotation axis */ 00097 INT32 rotation_range; /* 1000*rotation angle */ 00098 INT32 detector_rotx; /* 1000*rotation of detector around X */ 00099 INT32 detector_roty; /* 1000*rotation of detector around Y */ 00100 INT32 detector_rotz; /* 1000*rotation of detector around Z */ 00101 char reserve3[(32-28)*sizeof(INT32)]; 00102 00103 /* Detector parameters (128 bytes) */ 00104 INT32 detector_type; /* detector type */ 00105 INT32 pixelsize_x; /* pixel size (nanometers) */ 00106 INT32 pixelsize_y; /* pixel size (nanometers) */ 00107 INT32 mean_bias; /* 1000*mean bias value */ 00108 INT32 photons_per_100adu; /* photons / 100 ADUs */ 00109 INT32 measured_bias[MAXIMAGES]; /* 1000*mean bias value for each image*/ 00110 INT32 measured_temperature[MAXIMAGES]; /* Temperature of each detector in milliKelvins */ 00111 INT32 measured_pressure[MAXIMAGES]; /* Pressure of each chamber in microTorr */ 00112 /* Retired reserve4 when MAXIMAGES set to 9 from 16 and two fields removed, and temp and pressure added 00113 char reserve4[(32-(5+3*MAXIMAGES))*sizeof(INT32)]; 00114 */ 00115 00116 /* X-ray source and optics parameters (128 bytes) */ 00117 /* X-ray source parameters (8*4 bytes) */ 00118 INT32 source_type; /* (code) - target, synch. etc */ 00119 INT32 source_dx; /* Optics param. - (size microns) */ 00120 INT32 source_dy; /* Optics param. - (size microns) */ 00121 INT32 source_wavelength; /* wavelength (femtoMeters) */ 00122 INT32 source_power; /* (Watts) */ 00123 INT32 source_voltage; /* (Volts) */ 00124 INT32 source_current; /* (microAmps) */ 00125 INT32 source_bias; /* (Volts) */ 00126 INT32 source_polarization_x; /* () */ 00127 INT32 source_polarization_y; /* () */ 00128 char reserve_source[4*sizeof(INT32)]; 00129 00130 /* X-ray optics_parameters (8*4 bytes) */ 00131 INT32 optics_type; /* Optics type (code)*/ 00132 INT32 optics_dx; /* Optics param. - (size microns) */ 00133 INT32 optics_dy; /* Optics param. - (size microns) */ 00134 INT32 optics_wavelength; /* Optics param. - (size microns) */ 00135 INT32 optics_dispersion; /* Optics param. - (*10E6) */ 00136 INT32 optics_crossfire_x; /* Optics param. - (microRadians) */ 00137 INT32 optics_crossfire_y; /* Optics param. - (microRadians) */ 00138 INT32 optics_angle; /* Optics param. - (monoch. 2theta - microradians) */ 00139 INT32 optics_polarization_x; /* () */ 00140 INT32 optics_polarization_y; /* () */ 00141 00142 #ifdef FULL_HEADER 00143 char reserve_optics[4*sizeof(INT32)]; 00144 00145 char reserve5[((32-28)*sizeof(INT32))]; 00146 00147 /* File parameters (1024 bytes) */ 00148 char filetitle[128]; /* Title */ 00149 char filepath[128]; /* path name for data file */ 00150 char filename[64]; /* name of data file */ 00151 char acquire_timestamp[32]; /* date and time of acquisition */ 00152 char header_timestamp[32]; /* date and time of header update */ 00153 char save_timestamp[32]; /* date and time file saved */ 00154 char file_comments[512]; /* comments - can be used as desired */ 00155 char reserve6[1024-(128+128+64+(3*32)+512)]; 00156 00157 /* Dataset parameters (512 bytes) */ 00158 char dataset_comments[512]; /* comments - can be used as desired */ 00159 00160 char pad[3072-(256+128+256+(3*128)+1024+512)]; /* pad out to 3072 bytes */ 00161 00162 #endif 00163 00164 } MARCCD_HEADER; 00165 00166 /* size of frame */ 00167 #define NFAST 1024 00168 #define NSLOW 1024 00169 00170 /* possible orientations of frame data */ 00171 #define HFAST 0 00172 #define VFAST 1 00173 00174 /* possible origins of frame data */ 00175 #define UPPER_LEFT 0 00176 #define LOWER_LEFT 1 00177 #define UPPER_RIGHT 2 00178 #define LOWER_RIGHT 3 00179 00180 /* possible view directions of frame data for 00181 any given orientation and origin */ 00182 /* KLUDGE - These are used as option array indices - must be 0,1... */ 00183 #define FROM_SOURCE 0 00184 #define TOWARD_SOURCE 1 00185 00186 00187 /* possible locations in file of overflow table */ 00188 #define FOLLOWING_DATA 0 00189 #define FOLLOWING_HEADER 1 00190 00191 /* possible types of file format */ 00192 #define LINEAR_8 1001 00193 #define LINEAR_OVERFLOW_8 1002 00194 #define LINEAR_16 1003 00195 #define LINEAR_OVERFLOW_16 1004 00196 #define LOG_8 1005 00197 #define LOG_OVERFLOW_8 1006 00198 #define LOG_16 1007 00199 #define LOG_OVERFLOW_16 1008 00200 #define HEX_16 1009 00201 00202 /* possible types of compression format */ 00203 #define BUDDHA_20_COMPRESSION 1 00204 #define BUDDHA_30_COMPRESSION 2 00205 #define SIEMENS_8BIT_COMPRESSION 3 00206 #define LOG_COMPRESSION 4 00207 #define BUDDHA_20_PEAKS 5 00208 00209 /* possible types of data */ 00210 #define DATA_UNSIGNED_INTEGER 0 00211 #define DATA_SIGNED_INTEGER 1 00212 #define DATA_FLOAT 2 00213
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